Protocol: 2023_008 US MRI Planning
Open Access Status
Open AccessStable URL
https://open.oxcin.ox.ac.uk/protocols/stable/bd0dbc3b-ce5d-47a3-ba40-0a7472a1c3f9
Original Creation Date
2025-May-11 22:13:06
Version
Version 1 Edit 1 @ 2025-May-11 22:13:06
Version History
- This is the latest version
- See full history
| Protocol Version | Citation | Weblink | DOI | |
| Version 1 Edit 1 | Citing this protocol: Eleanor Martin, Morgan Roberts, Ioana F Grigoras, Olivia Wright, Tulika Nandi, Sebastian W Rieger, Jon Campbell, Tim den Boer, Ben T Cox, Charlotte J Stagg, Bradley E Treeby (2025). Open WIN MR Protocol: TUS-MRI study. Zenodo. https://doi.org/10.5281/zenodo.15360988 Please also cite the first paper published using this protocol: Eleanor Martin, Morgan Roberts, Ioana F Grigoras, Olivia Wright, Tulika Nandi, Sebastian W Rieger, Jon Campbell, Tim den Boer, Ben T Cox, Charlotte J Stagg, Bradley E Treeby (2025). Ultrasound system for precise neuromodulation of human deep brain circuits; DOI https://doi.org/10.1101/2024.06.08.597305 Acknowledgements: This study was supported by the Engineering and Physical Sciences Research Council, UK (EP/P008860/1, EP/P008712/1, EP/S026371/1). The k-Plan simulations were supported by the Ministry of Education, Youth and Sports of the Czech Republic through the e-INFRA CZ (ID:90254). EM was supported by a UKRI Future Leaders Fellowship (MR/T019166/1) and in part by the Wellcome/EPSRC Centre for Interventional and Surgical Sciences (WEISS) (203145Z/16/Z). CJS was supported by a Wellcome Trust Senior Research Fellowship (224430/Z/21/Z). The Wellcome Centre for Integrative Neuroimaging is supported by core funding from the Wellcome Trust (203139/Z/16/Z and 203139/A/16/Z). This study was supported by the NIHR Oxford Health Biomedical Research Centre (NIHR203316). The views expressed are those of the authors and not necessarily those of the NHS, NIHR or the Department of Health. For the purpose of open access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission. | Weblink | DOI |
Scanner
MAGNETOM 3T Prisma - Syngo VE11C-SP01
Application
In Vivo
Total Acquisition Time
0h:47m:5s
Coils
- 3T Siemens Head/Neck Coil 64ch
Project
2023_008 US MRI Planning
File Attachments
- 2023_009_US_MRI_Planning_-_Planning_v1.6.pdf
Description
This protocol was used in a brain stimulation study where transcranial ultrasound stimulation was applied to the lateral geniculate nucleus and brain fMRI data was acquired during stimulation (online sessions) or before and after stimulation (offline sessions). The experimental design is described in more detail in the preprint "Ultrasound system for precise neuromodulation of human deep brain circuits" here: https://www.biorxiv.org/content/10.1101/2024.06.08.597305v1. Specifically, this protocol was used in the first planning session.
Keywords
brain stimulationUsage Guidance
Staffing levels: 1 x scanner operator and 1 x researcher
Protocol Structure
- Planning v1.6
- localizer
- localizer_2
- t2_flair_sag_p2_1mm_FS_ellip_pf78
- t1_mprage_sag_p2_iso
- noT1_petra_tra_FA_1_deg
- t1_mpr_ax_1mm_iso_withNose_32ch_v2
- diff_PA_MPopt_MB3_3b0_lowflip
- diff_AP_MPopt_MB3_50b1000_50b2000_8b0_lowflip
- MB8_FMRI_fov210_2.4mm_resting
- bold_mbep2d_MB3P2_TE25_TR1500
- fieldmap_2p5mm_FoV_210x210x150
Keywords
BOLD
Acquisition Time
0h:6m:10s
Description
Resting state fMRI scan acquired with a T2*-weighted 2D multiband EPI sequence.
Participants were asked to fixate on a white cross presented on a black screen, to blink normally, and to try not to fall asleep.